Fix CI workflows: linting, changelog, and documentation#489
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Fix CI workflows: linting, changelog, and documentation#489Copilot wants to merge 5 commits intodecay-curve-2from
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Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
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Just as a heads up, I was blocked by some firewall rules while working on your feedback. Expand below for details. Warning Firewall rules blocked me from connecting to one or more addresses (expand for details)I tried to connect to the following addresses, but was blocked by firewall rules:
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[WIP] Add interactive Shiny app for antigen-antibody kinetics visualization
Fix CI workflows: linting, changelog, and documentation
Jan 21, 2026
d-morrison
approved these changes
Jan 21, 2026
Codecov Report❌ Patch coverage is
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Description
Resolves CI workflow failures for the decay-curve-2 branch by addressing linting violations, missing changelog entries, and incomplete pkgdown configuration.
Changes
Code style compliance
=→<-), brace placement, indentation, and spacing in 8 new R files.lintr.Rexclusions fort1.Randy1.R(internal functions with digit-letter naming pattern)Documentation
curve_app(), UI/server components) and decay curve functions (antibody_decay_curve(),pathogen_decay_curve(),t1f(),y1f(),plot_decay_curve())pkgdown/_pkgdown.ymlwith new reference sections: "Interactive visualization" and "Modeling and plotting decay curves"ggplotandUIto spelling dictionaryChecklist
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